Publication

Publication

E. Lengyel, Y. Li, M. Weigert, L. Zhu, H. Eckart, M. Javellana, S. Ackroyd, J. Xiao, S. Olalekan, D. Glass, S. Iyer, A. J. Bilecz, R. Lastra, M. Chen, A. Basu, “A molecular atlas of the human postmenopausal fallopian tube and ovary from single-cell RNA and ATAC sequencing”, Biorxiv, https://doi.org/10.1101/2022.08.04.502826 (pdf)

R. Dohn, B. Xie, R. Back, A. Selewa, H. Eckart, R. Prusty Rao, A. Basu, “mDrop-seq: Massively parallel single-cell RNA-seq of Saccharomyces cerevisiae and Candida albicans“, Vaccines, 10(1), 30 (2022), https://doi.org/10.3390/vaccines10010030 (pdf)

V. Phan, M. van Gent, N. Drayman, A. Basu, M. U. Gack, S. Tay, “High-throughput RNA sequencing of paraformaldehyde-fixed single cells”, Nature Communications, 12, 5636 (2021), https://doi.org/10.1038/s41467-021-25871-2 (pdf)

M. Hammes, A. Moya-Rodriguez, C. Bernstein, S. Nathan, R. Navuluri, A. Basu, “Computational modeling of the cephalic arch predicts hemodynamic profiles in patients with brachiocephalic fistula access receiving hemodialysis”, PLoS ONE, 16(7): e0254016 (2021), https://doi.org/10.1371/journal.pone.0254016 (pdf)

S. Olalekan, B. Xie, R. Back, H. Eckart, A. Basu, “Characterizing the tumor microenvironment of metastatic ovarian cancer by single cell transcriptomics”, Cell Reports, 35, 109165 (2021) https://doi.org/10.1016/j.celrep.2021.109165 (pdf)

A. Guzzetta, M. Koska, M. Rowton, J. Kweon, H. Hidalgo, H. Eckhart, A. Moon, A. Basu*, M. Bressan*, S. Pott*, I. Moskowitz*, “A Hedgehog-FGF signaling axis patterns anterior mesoderm during gastrulation”, PNAS, (pdf)

A. Selewa, R. Dohn, H. Eckart, S. Lozano, B. Xie, E. Gauchat, R. Elorbany, K. Rhodes, J. Burnett, Y. Gilad, S. Pott, A. Basu, “Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation”, Scientific Reports, 10, 1535 (2020) (pdf)

M. Hammes, R. L. McGill, A. Basu, T. Blicharski, K. Delaney, “Hemodynamic effects of hemodialyzer pump speed on arteriovenous fistulas”, Clinical Nephrology, 91, 138 (2019) (pdf)

N. Habib*, I. Avraham-Davidi*, A. Basu*, T. Burks, K. Shekhar, M. Hofree, S. R. Choudhury, F. Aguet, E. Gelfand, K. Ardlie, D. A. Weitz, O. Rozenblatt-Rosen, F. Zhang & A. Regev, Massively parallel single nucleus RNA -seq with DroNc-seq”

E.  Z. Macosko, A. Basu, R. Satija, J. Nemesh, K. Shekhar, M. Goldman, I. Tirosh, A.  R. Bialas, N. Kamitaki, E.  M. Martersteck, J. J. Trombetta, D. A. Weitz, J. R. Sanes, A. K. Shalek, A. Regev and S. A. McCarroll, “Highly Parallel Genome-Wide Expression Profiling of Individual Cells Using Nanoliter Droplets”, Cell, 161, 1202 (2015) (pdf)

A. Rotem, O. Ram, N. Shoresh, R. A. Sperling, M. Schnall-Levin, H. Zhang, A. Basu, B. E. Bernstein and D. A. Weitz, “High-Throughput Single-Cell Labeling (Hi-Scl) for Rna-Seq Using Drop-Based Microfluidics”, PLoS ONE, 10, e0116328 (2015) (pdf)

A. Basu, Y. Xu, T. Still, P. E. Arratia, Z. Zhang, K. N. Nordstrom, J. M. Rieser, J. P. Gollub, D.J. Durian and A. G. Yodh, “Rheology of Soft Colloids Across the Onset of Rigidity: Scaling Behavior, Thermal, and Non-thermal Responses”, Soft Matter, 10(17), 3027 (2014) (pdf)

A. Guha and A. Basu, “Role of rare earth oxide nanoparticles (CeO2 and La2O3) in suppressing the photobleaching of fluorescent organic dyes”, Journal of Fluorescence, 24(3), 683 (2014) (pdf)

Q. Wen, A. Basu, P. A. Janmey and A. G. Yodh, “Non-affine deformations in polymer hydrogels”, Soft Matter, 8, 8039 (2012) (pdf)

A. Basu, Q. Wen, X. Mao, T. C. Lubensky, P.A. Janmey and A. G. Yodh, “Non-affine displacements in flexible polymer networks”, Macromolecules, 44, 1671 (2011) (pdf)

K. N. Nordstrom, E. Verneuil, P. E. Arratia, A. Basu, Z. Zhang, A. G. Yodh, J. P. Gollub and D. J. Durian, “Microfluidic rheology of soft colloids above and below jamming”, Physical Review Letters, 105, 175701 (2010) (pdf)

Q. Wen, A. Basu, J. Winer, A. Yodh and P. Janmey, “Local and global deformations in a strain-stiffening fibrin gel”, New Journal of Physics, 9 428 (2007) (pdf)